Transcript: MALINC1:75

Basic information

LNCipedia transcript ID: MALINC1:75 
HGNC Gene Symbol: MALINC1    
HGNC Full Gene Name: mitosis associated long intergenic non-coding RNA 1
Ensembl Gene ID: ENSG00000245146
Ensembl Transcript ID: ENST00000499203
Location (hg38): chr5:140102922-140107643
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2769 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499203; ENST00000499203.2; CTB-131B5.4-007; OTTHUMT00000374358.1; ENST00000499203.6
Alternative gene names: ENSG00000245146; CTB-131B5.4; ENSG00000245146.2; OTTHUMG00000163537.2; LINC01024; ENSG00000245146.6; MA-linc1; MALINC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.188 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MALINC1:75 no no no no

Available literature

  1. Bida (2015), A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NRG2-1:5
3.1 lnc-NRG2-1:5
4.0 LINC01024:12
4.1 LINC01024:12
5.0 LINC01024:12
5.1 MALINC1:37
5.2 MALINC1:75