Transcript: MAFG-DT:13

Basic information

LNCipedia transcript ID: MAFG-DT:13 
LNCipedia gene ID: MAFG-DT
Location (hg38): chr17:81927829-81930752
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1894 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: TCONS_00025107; ENST00000500627
Alternative gene names: XLOC_012342; linc-ASPSCR1; ENSG00000247329; AC145207.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5584 non-coding 
CPAT coding probability 76.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MAFG-DT:13 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NPB-1:1
3.1 lnc-NPB-2:2
4.0 MAFG-AS1:1
4.1 MAFG-AS1:1
5.0 MAFG-AS1:1
5.1 MAFG-DT:2
5.2 MAFG-DT:13