Transcript: MAFA-AS1:9

Basic information

LNCipedia transcript ID: MAFA-AS1:9 
LNCipedia gene ID: MAFA-AS1
Ensembl Gene ID: ENSG00000253931
Ensembl Transcript ID: ENST00000523002
Location (hg38): chr8:143412749-143417054
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523002.1; RP11-909N17.2-001; OTTHUMT00000381459.1; NONHSAT129573
Alternative gene names: ENSG00000253931.1; RP11-909N17.2; OTTHUMG00000165016.1; RP11-909N17.3; TCONS_00014882; AC105118.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0242 non-coding 
CPAT coding probability 6.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAFA-AS1:9 no no no no

Available literature

  1. Xu (2014), Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RHPN1-2:1
4.0 lnc-RHPN1-2:1
4.1 MAFA-AS1:9
5.0 MAFA-AS1:9
5.1 MAFA-AS1:9
5.2 MAFA-AS1:9