Transcript: MACROD2-IT1:1

Basic information

LNCipedia transcript ID: MACROD2-IT1:1 
HGNC Gene Symbol: MACROD2-IT1    
HGNC Full Gene Name: MACROD2 intronic transcript 1
Ensembl Gene ID: ENSG00000227927
Ensembl Transcript ID: ENST00000448536
RefSeq ID: NR_104193
Location (hg38): chr20:14554384-14628908
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 665 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000448536.1; MACROD2-IT1-001; OTTHUMT00000078080.3; NONHSAT078718; NR_104193; NR_104193.2
Alternative gene names: ENSG00000227927.1; MACROD2-IT1; OTTHUMG00000031917.3; ENSG00000227927.2; bA467D7.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.5448 non-coding 
CPAT coding probability 3.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MACROD2-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf7-1:1
4.0 MACROD2-IT1:1
4.1 MACROD2-IT1:1
5.0 MACROD2-IT1:1
5.1 MACROD2-IT1:1
5.2 MACROD2-IT1:1