Transcript: LY6E-DT:31

Basic information

LNCipedia transcript ID: LY6E-DT:31 
HGNC Gene Symbol: LY6E-DT    
HGNC Full Gene Name: LY6E divergent transcript
Ensembl Gene ID: ENSG00000247317
Ensembl Transcript ID: ENST00000517833
Location (hg38): chr8:142981738-143018390
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 995 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517833; ENST00000517833.1; RP11-273G15.2-003; OTTHUMT00000380063.1
Alternative gene names: ENSG00000247317; RP11-273G15.2; ENSG00000247317.3; OTTHUMG00000164752.1; AC105202.1; LY6E-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.7381 non-coding 
CPAT coding probability 61.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LY6E-DT:31 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP11B2-1:3
3.1 lnc-CYP11B2-1:3
4.0 lnc-CYP11B2-1:3
4.1 lnc-CYP11B2-1:3
5.0 lnc-CYP11B2-1:3
5.1 LY6E-DT:12
5.2 LY6E-DT:31