Transcript: LSAMP-AS1:2

Basic information

LNCipedia transcript ID: LSAMP-AS1:2 
LNCipedia gene ID: LSAMP-AS1
RefSeq ID: NR_109998
Location (hg38): chr3:116360024-116370085
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109998; NR_109998.1
Alternative gene names: ; LSAMP-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -343.637 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LSAMP-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAP43-4:2
4.0 LSAMP-AS1:2
4.1 LSAMP-AS1:2
5.0 LSAMP-AS1:2
5.1 LSAMP-AS1:2
5.2 LSAMP-AS1:2