Transcript: LSAMP-AS1:1

Basic information

LNCipedia transcript ID: LSAMP-AS1:1 
HGNC Gene Symbol: LSAMP-AS1    
HGNC Full Gene Name: LSAMP antisense RNA 1
Ensembl Gene ID: ENSG00000240922
Ensembl Transcript ID: ENST00000490351
Location (hg38): chr3:116360024-116370090
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000490351.1; LSAMP-AS1-001; OTTHUMT00000354494.2; NONHSAT091310
Alternative gene names: ENSG00000240922.1; LSAMP-AS1; OTTHUMG00000159307.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -343.637 non-coding 
CPAT coding probability 1.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LSAMP-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAP43-4:1
4.0 LSAMP-AS1:1
4.1 LSAMP-AS1:1
5.0 LSAMP-AS1:1
5.1 LSAMP-AS1:1
5.2 LSAMP-AS1:1