Transcript: LRRC75A-AS1:11

Basic information

LNCipedia transcript ID: LRRC75A-AS1:11 
LNCipedia gene ID: LRRC75A-AS1
RefSeq ID: NR_027175
Location (hg38): chr17:16438987-16470648
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 635 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT145921; NR_027175; NR_027175.1
Alternative gene names: MGC40157; LRRC75A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -166.1786 non-coding 
CPAT coding probability 4.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LRRC75A-AS1:11 no no no no

Available literature

  1. Wang (2018), A three‑lncRNA signature for prognosis prediction of acute myeloid leukemia in patients., Mol Med Rep
  2. Zhang (2016), Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis., Arthritis Res. Ther.
  3. Zhang (2014), Species-specific alternative splicing leads to unique expression of sno-lncRNAs., BMC Genomics
  4. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPV2-1:40
4.0 LRRC75A-AS1:11
4.1 LRRC75A-AS1:11
5.0 LRRC75A-AS1:11
5.1 LRRC75A-AS1:11
5.2 LRRC75A-AS1:11