Transcript: LNX1-AS2:1

Basic information

LNCipedia transcript ID: LNX1-AS2:1 
HGNC Gene Symbol: LNX1-AS2    
HGNC Full Gene Name: LNX1 antisense RNA 2
Ensembl Gene ID: ENSG00000248494
Ensembl Transcript ID: ENST00000509974
Location (hg38): chr4:53592956-53604047
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 628 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509974.1; LNX1-AS2-001; OTTHUMT00000361539.1
Alternative gene names: ENSG00000248494.1; LNX1-AS2; OTTHUMG00000160646.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.0124 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNX1-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GSX2-3:1
4.0 LNX1-AS2:1
4.1 LNX1-AS2:1
5.0 LNX1-AS2:1
5.1 LNX1-AS2:1
5.2 LNX1-AS2:1