Transcript: LNCPRESS1:24

Basic information

LNCipedia transcript ID: LNCPRESS1:24 
LNCipedia gene ID: LNCPRESS1
Location (hg38): chr7:101308340-101321144
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 735 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_110115
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.86 non-coding 
CPAT coding probability 45.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LNCPRESS1:24 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNHIT1-1:4
4.0 lnc-ZNHIT1-1:4
4.1 lnc-ZNHIT1-1:4
5.0 lnc-ZNHIT1-1:4
5.1 LNCPRESS1:12
5.2 LNCPRESS1:24