Transcript: LNCPRESS1:20

Basic information

LNCipedia transcript ID: LNCPRESS1:20 
LNCipedia gene ID: LNCPRESS1
Location (hg38): chr7:101308296-101310985
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 755 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232445.1|ENST00000419422.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.86 non-coding 
CPAT coding probability 29.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCPRESS1:20 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZNHIT1-1:9
5.0 lnc-ZNHIT1-1:9
5.1 LNCPRESS1:8
5.2 LNCPRESS1:20