Transcript: LNCPRESS1:16

Basic information

LNCipedia transcript ID: LNCPRESS1:16 
LNCipedia gene ID: LNCPRESS1
Location (hg38): chr7:101299613-101301270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 756 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: TCONS_00013053; ENST00000429254.1; RP11-132A1.3-001; OTTHUMT00000347487.1; NONHSAT122461
Alternative gene names: XLOC_006194; linc-EMID2; ENSG00000232301.1; RP11-132A1.3; OTTHUMG00000157112.1; LNCPRESS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.6193 non-coding 
CPAT coding probability 39.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LNCPRESS1:16 no no no no

Available literature

  1. Jain (2016), LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56., Mol. Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNHIT1-1:1
3.1 lnc-ZNHIT1-1:1
4.0 lnc-ZNHIT1-1:1
4.1 lnc-ZNHIT1-1:1
5.0 lnc-ZNHIT1-1:1
5.1 LNCPRESS1:4
5.2 LNCPRESS1:16