Transcript: LNCOC1:9

Basic information

LNCipedia transcript ID: LNCOC1:9 
LNCipedia gene ID: LNCOC1
Location (hg38): chr8:142688219-142727000
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 28468 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253741.1|ENCT00000441262.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.4595 non-coding 
CPAT coding probability 31.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LNCOC1:9 no no no no

Available literature

  1. Tao (2018), A novel lncRNA, Lnc-OC1, promotes ovarian cancer cell proliferation and migration by sponging miR-34a and miR-34c., J Genet Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLURP1-2:5
5.0 lnc-SLURP1-2:5
5.1 LNCOC1:3
5.2 LNCOC1:9