Transcript: LIVAR:5

Basic information

LNCipedia transcript ID: LIVAR:5 
HGNC Gene Symbol: LIVAR    
HGNC Full Gene Name: liver cell viability associated lncRNA
Ensembl Gene ID: ENSG00000266304
Ensembl Transcript ID: ENST00000578633
Location (hg38): chr18:70335929-70337310
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 384 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578633.1; RP11-484N16.1-001; OTTHUMT00000443006.1; NONHSAT059771
Alternative gene names: ENSG00000266304.1; RP11-484N16.1; OTTHUMG00000178698.1; LIVAR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.3375 non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIVAR:5 no no no no

Available literature

  1. Atanasovska (2017), A liver-specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis., Hepatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RTTN-1:1
4.0 lnc-RTTN-1:1
4.1 lnc-RTTN-1:1
5.0 lnc-RTTN-1:1
5.1 LIVAR:2
5.2 LIVAR:5