Transcript: LINP1:5

Basic information

LNCipedia transcript ID: LINP1:5 
LNCipedia gene ID: LINP1
Location (hg38): chr10:6737373-6739026
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 926 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000223784.1|ENST00000417112.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -154.9551 non-coding 
CPAT coding probability 5.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINP1:5 no no no no

Available literature

  1. Zhang (2016), Long noncoding RNA LINP1 regulates repair of DNA double-strand breaks in triple-negative breast cancer., Nat. Struct. Mol. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL137145.1-5:2
5.0 lnc-AL137145.1-5:2
5.1 LINP1:2
5.2 LINP1:5