Transcript: LINCMD1:3

Basic information

LNCipedia transcript ID: LINCMD1:3 
LNCipedia gene ID: LINCMD1
RefSeq ID: NR_131248
Location (hg38): chr6:52146814-52151023
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 366 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131248.1
Alternative gene names: LINCMD1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -315.087 non-coding 
CPAT coding probability 12.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINCMD1:3 no no no no

Available literature

  1. Legnini (2014), A feedforward regulatory loop between HuR and the long noncoding RNA linc-MD1 controls early phases of myogenesis., Mol. Cell
  2. Cesana (2011), A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINCMD1:3
5.1 LINCMD1:3
5.2 LINCMD1:3