Transcript: LINCMD1:1

Basic information

LNCipedia transcript ID: LINCMD1:1 
LNCipedia gene ID: LINCMD1
Location (hg38): chr6:52146814-52151425
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000418518; ENST00000418518.1; RP11-771D21.2-001; OTTHUMT00000040895.1; NONHSAT113098
Alternative gene names: ENSG00000225613; RP11-771D21.2; ENSG00000225613.1; OTTHUMG00000014842.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -315.087 non-coding 
CPAT coding probability 20.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINCMD1:1 no no no no

Available literature

  1. Legnini (2014), A feedforward regulatory loop between HuR and the long noncoding RNA linc-MD1 controls early phases of myogenesis., Mol. Cell
  2. Cesana (2011), A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PKHD1-1:1
3.1 lnc-PKHD1-1:1
4.0 LINCMD1:1
4.1 LINCMD1:1
5.0 LINCMD1:1
5.1 LINCMD1:1
5.2 LINCMD1:1