Transcript: LINC02580:15

Basic information

LNCipedia transcript ID: LINC02580:15 
HGNC Gene Symbol: LINC02580    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2580
Ensembl Gene ID: ENSG00000230587
Ensembl Transcript ID: ENST00000434020
Location (hg38): chr2:43097746-43102691
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 952 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003266; ENST00000434020; ENST00000434020.1; AC093609.1-001; OTTHUMT00000326019.2; NONHSAT070378
Alternative gene names: XLOC_002070; linc-HAAO-6; ENSG00000230587; AC093609.1; ENSG00000230587.1; OTTHUMG00000152374.2; LINC02580


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.8317 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02580:15 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THADA-1:3
3.1 lnc-THADA-1:3
4.0 lnc-THADA-1:3
4.1 lnc-THADA-1:3
5.0 lnc-THADA-1:3
5.1 LINC02580:8
5.2 LINC02580:15