Transcript: LINC02563:3

Basic information

LNCipedia transcript ID: LINC02563:3 
HGNC Gene Symbol: LINC02563    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2563
Ensembl Gene ID: ENSG00000263520
Ensembl Transcript ID: ENST00000579474
RefSeq ID: NR_131984
Location (hg38): chr17:65457541-65458408
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 277 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000579474.1; CTD-2535L24.3-001; OTTHUMT00000446986.1; NONHSAT055374; NR_131984.1
Alternative gene names: ENSG00000263520.1; CTD-2535L24.3; OTTHUMG00000179538.1; CRAT40; LINC02563


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.2047 non-coding 
CPAT coding probability 4.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02563:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGS9-3:1
4.0 lnc-RGS9-3:1
4.1 lnc-RGS9-3:1
5.0 lnc-RGS9-3:1
5.1 LINC02563:2
5.2 LINC02563:3