Transcript: LINC02561:18

Basic information

LNCipedia transcript ID: LINC02561:18 
LNCipedia gene ID: LINC02561
Location (hg38): chr10:5273139-5284536
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 798 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224034.1|FTMT23700032761.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 80.4503 coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02561:18 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AKR1CL1-1:8
5.0 lnc-AKR1CL1-1:8
5.1 LINC02561:8
5.2 LINC02561:18