Transcript: LINC02551:13

Basic information

LNCipedia transcript ID: LINC02551:13 
HGNC Gene Symbol: LINC02551    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2551
Ensembl Gene ID: ENSG00000254842
Ensembl Transcript ID: ENST00000533812
Location (hg38): chr11:130844191-130865561
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2203 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT025146; ENST00000533812.2; ENST00000533812.6
Alternative gene names: ENSG00000254842.2; RP11-890B15.2; ENSG00000254842.6; LINC02551


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.0394 non-coding 
CPAT coding probability 35.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02551:13 no no no no

Available literature

  1. Balloy (2017), Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon <i>Pseudomonas aeruginosa</i> Infection., Front Cell Infect Microbiol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-890B15.2.1-1:4
4.0 lnc-RP11-890B15.2.1-1:4
4.1 lnc-RP11-890B15.2.1-1:4
5.0 lnc-RP11-890B15.2.1-1:4
5.1 LINC02551:6
5.2 LINC02551:13