Transcript: LINC02541:57

Basic information

LNCipedia transcript ID: LINC02541:57 
HGNC Gene Symbol: LINC02541    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2541
Ensembl Gene ID: ENSG00000230943
Ensembl Transcript ID: ENST00000452675
Location (hg38): chr6:113623779-113632514
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011544; ENST00000452675; ENST00000452675.1; RP11-367G18.1-002; OTTHUMT00000041898.1; NONHSAT114562
Alternative gene names: XLOC_005810; linc-LAMA4-2; ENSG00000230943; RP11-367G18.1; ENSG00000230943.1; OTTHUMG00000015401.1; LINC02541


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -187.0123 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02541:57 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDAC2-2:4
3.1 lnc-HDAC2-2:4
4.0 lnc-HDAC2-2:4
4.1 lnc-HDAC2-2:4
5.0 lnc-HDAC2-2:4
5.1 LINC02541:25
5.2 LINC02541:57