Transcript: LINC02532:46

Basic information

LNCipedia transcript ID: LINC02532:46 
HGNC Gene Symbol: LINC02532    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2532
Ensembl Gene ID: ENSG00000235142
Ensembl Transcript ID: ENST00000436659
RefSeq ID: NR_033557
Location (hg38): chr6:106717452-106787425
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1387 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000436659; ENST00000436659.1; RP1-60O19.1-004; OTTHUMT00000041679.1; NONHSAT114258; NR_033557; ENST00000436659.5; NR_033557.1
Alternative gene names: ENSG00000235142; RP1-60O19.1; ENSG00000235142.1; OTTHUMG00000015305.1; ENSG00000235142.3; ENSG00000235142.7; LINC02532; LOC100422737


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.8068 non-coding 
CPAT coding probability 4.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02532:46 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RTN4IP1-2:5
3.1 lnc-RTN4IP1-2:5
4.0 lnc-RTN4IP1-2:5
4.1 lnc-RTN4IP1-2:5
5.0 lnc-RTN4IP1-2:5
5.1 LINC02532:19
5.2 LINC02532:46