Transcript: LINC02525:30

Basic information

LNCipedia transcript ID: LINC02525:30 
LNCipedia gene ID: LINC02525
Location (hg38): chr6:3182744-3195747
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1470 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011433; ENST00000425384; ENST00000425384.1; RP1-40E16.9-002; OTTHUMT00000039674.1; NONHSAT107006
Alternative gene names: XLOC_005583; linc-TUBB2A; ENSG00000230269; RP1-40E16.9; ENSG00000230269.1; OTTHUMG00000014141.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.8088 non-coding 
CPAT coding probability 23.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02525:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBB2A-1:4
3.1 lnc-TUBB2A-2:4
4.0 lnc-TUBB2A-2:4
4.1 lnc-TUBB2A-2:4
5.0 lnc-TUBB2A-2:4
5.1 LINC02525:15
5.2 LINC02525:30