Transcript: LINC02525:28

Basic information

LNCipedia transcript ID: LINC02525:28 
LNCipedia gene ID: LINC02525
Location (hg38): chr6:3182744-3195756
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1506 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011434; ENST00000435043; ENST00000435043.1; RP1-40E16.9-001; OTTHUMT00000039673.1; NONHSAT107005
Alternative gene names: XLOC_005583; linc-TUBB2A; ENSG00000230269; RP1-40E16.9; ENSG00000230269.1; OTTHUMG00000014141.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1692 non-coding 
CPAT coding probability 23.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02525:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TUBB2A-1:3
3.1 lnc-TUBB2A-2:3
4.0 lnc-TUBB2A-2:3
4.1 lnc-TUBB2A-2:3
5.0 lnc-TUBB2A-2:3
5.1 LINC02525:13
5.2 LINC02525:28