Transcript: LINC02520:41

Basic information

LNCipedia transcript ID: LINC02520:41 
LNCipedia gene ID: LINC02520
Ensembl Gene ID: ENSG00000227920
Ensembl Transcript ID: ENST00000414875
Location (hg38): chr6:37545145-37550860
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 998 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414875.2; RP1-153P14.5-001; OTTHUMT00000040407.2; NONHSAT112269
Alternative gene names: ENSG00000227920.2; RP1-153P14.5; OTTHUMG00000014623.2; AL353597.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5679 non-coding 
CPAT coding probability 23.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02520:41 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL353597.1-3:1
4.0 lnc-AL353597.1-3:1
4.1 lnc-AL353597.1-1:20
5.0 lnc-AL353597.1-1:20
5.1 LINC02520:20
5.2 LINC02520:41