Transcript: LINC02499:9

Basic information

LNCipedia transcript ID: LINC02499:9 
HGNC Gene Symbol: LINC02499    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2499
Ensembl Gene ID: ENSG00000250436
Ensembl Transcript ID: ENST00000502291
RefSeq ID: NR_046377
Location (hg38): chr4:73508803-73528533
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 763 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007548; ENST00000502291; ENST00000502291.1; RP11-622A1.2-001; OTTHUMT00000365441.1; NONHSAT096859; NR_046377; NR_046377.1
Alternative gene names: XLOC_003572; linc-IL8-2; ENSG00000250436; RP11-622A1.2; ENSG00000250436.1; OTTHUMG00000161581.1; LINC02499; LOC728040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.431 non-coding 
CPAT coding probability 11.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02499:9 no no no no

Available literature

  1. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AFM-1:1
3.1 lnc-AFM-1:1
4.0 lnc-AFM-1:1
4.1 lnc-AFM-1:1
5.0 lnc-AFM-1:1
5.1 LINC02499:3
5.2 LINC02499:9