Transcript: LINC02470:13

Basic information

LNCipedia transcript ID: LINC02470:13 
HGNC Gene Symbol: LINC02470    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2470
Ensembl Gene ID: ENSG00000225231
Ensembl Transcript ID: ENST00000412084
RefSeq ID: NR_104634
Location (hg38): chr12:9936579-9943495
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 979 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000412084; ENST00000412084.1; AC091814.2-001; OTTHUMT00000277174.1; NONHSAT026854; NR_104634; NR_104634.2
Alternative gene names: ENSG00000225231; AC091814.2; ENSG00000225231.1; OTTHUMG00000140394.1; LINC02470; LOC100506159


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.9591 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02470:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLEC2A-1:1
3.1 lnc-CLEC2A-1:1
4.0 lnc-CLEC2A-1:1
4.1 lnc-CLEC2A-1:1
5.0 lnc-CLEC2A-1:1
5.1 LINC02470:2
5.2 LINC02470:13