Transcript: LINC02466:6

Basic information

LNCipedia transcript ID: LINC02466:6 
HGNC Gene Symbol: LINC02466    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2466
Ensembl Gene ID: ENSG00000246876
Ensembl Transcript ID: ENST00000500092
RefSeq ID: NR_110753
Location (hg38): chr4:129724171-129771478
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1963 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500092; ENST00000500092.2; RP11-519M16.1-001; OTTHUMT00000364132.1; NR_110753; ENST00000500092.6; NR_110753.1
Alternative gene names: ENSG00000246876; RP11-519M16.1; ENSG00000246876.2; OTTHUMG00000161199.1; ENSG00000246876.6; LINC02466; LOC101927282


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.2064 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02466:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCLT1-3:2
3.1 lnc-SCLT1-3:2
4.0 lnc-SCLT1-3:2
4.1 lnc-SCLT1-3:2
5.0 lnc-SCLT1-3:2
5.1 LINC02466:3
5.2 LINC02466:6