Transcript: LINC02460:4

Basic information

LNCipedia transcript ID: LINC02460:4 
HGNC Gene Symbol: LINC02460    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2460
Ensembl Gene ID: ENSG00000255714
Ensembl Transcript ID: ENST00000543558
Location (hg38): chr12:118645315-118648724
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543558; ENST00000543558.1; RP11-121J20.1-001; OTTHUMT00000401563.1; NONHSAT031044
Alternative gene names: ENSG00000255714; RP11-121J20.1; ENSG00000255714.1; OTTHUMG00000168901.1; LINC02460


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.0343 non-coding 
CPAT coding probability 12.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02460:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAOK3-2:1
3.1 lnc-TAOK3-2:1
4.0 lnc-TAOK3-2:1
4.1 lnc-TAOK3-2:1
5.0 lnc-TAOK3-2:1
5.1 LINC02460:2
5.2 LINC02460:4