Transcript: LINC02436:9

Basic information

LNCipedia transcript ID: LINC02436:9 
HGNC Gene Symbol: LINC02436    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2436
Ensembl Gene ID: ENSG00000250754
Ensembl Transcript ID: ENST00000506338
Location (hg38): chr4:185051896-185062816
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 848 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506338.1; RP11-386B13.3-002; OTTHUMT00000360799.1; NONHSAT099593; FPKM1_group_24625_transcript_1; ENST00000506338.5
Alternative gene names: ENSG00000250754.1; RP11-386B13.3; OTTHUMG00000160487.2; ENSG00000250754.5; LINC02436


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.1706 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02436:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HELT-2:1
4.0 lnc-HELT-2:1
4.1 lnc-HELT-2:1
5.0 lnc-HELT-2:1
5.1 LINC02436:2
5.2 LINC02436:9