Transcript: LINC02429:5

Basic information

LNCipedia transcript ID: LINC02429:5 
HGNC Gene Symbol: LINC02429    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2429
Ensembl Gene ID: ENSG00000251266
Ensembl Transcript ID: ENST00000513836
Location (hg38): chr4:58984282-59046957
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 694 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007539; ENST00000513836; ENST00000513836.1; RP11-340A13.2-001; OTTHUMT00000364300.2; NONHSAT096583
Alternative gene names: XLOC_003551; linc-LPHN3-4; ENSG00000251266; RP11-340A13.2; ENSG00000251266.1; OTTHUMG00000161247.2; LINC02429


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.454 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02429:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR2B-6:1
3.1 lnc-POLR2B-6:1
4.0 lnc-POLR2B-6:1
4.1 lnc-POLR2B-6:1
5.0 lnc-POLR2B-6:1
5.1 LINC02429:2
5.2 LINC02429:5