Transcript: LINC02420:7

Basic information

LNCipedia transcript ID: LINC02420:7 
HGNC Gene Symbol: LINC02420    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2420
Ensembl Gene ID: ENSG00000256172
Ensembl Transcript ID: ENST00000543387
Location (hg38): chr12:67440998-67442559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 741 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000543387; ENST00000543387.1; RP11-473M14.3-001; OTTHUMT00000402124.1; NONHSAT029253
Alternative gene names: ENSG00000256172; RP11-473M14.3; ENSG00000256172.1; OTTHUMG00000169068.1; LINC02420


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.1424 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02420:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRIP1-4:2
3.1 lnc-GRIP1-4:2
4.0 lnc-GRIP1-4:2
4.1 lnc-GRIP1-4:2
5.0 lnc-GRIP1-4:2
5.1 LINC02420:4
5.2 LINC02420:7