Transcript: LINC02399:4

Basic information

LNCipedia transcript ID: LINC02399:4 
HGNC Gene Symbol: LINC02399    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2399
Ensembl Gene ID: ENSG00000257725
Ensembl Transcript ID: ENST00000547094
RefSeq ID: NR_135019
Location (hg38): chr12:89947693-89949726
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 400 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000547094; ENST00000547094.1; RP11-654D12.3-001; OTTHUMT00000406667.1; NONHSAT029834; NR_135019.1
Alternative gene names: ENSG00000257725; RP11-654D12.3; ENSG00000257725.1; OTTHUMG00000169952.1; LINC02399; LOC105369891


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.0004 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02399:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMTC3-3:1
3.1 lnc-TMTC3-4:1
4.0 lnc-TMTC3-4:1
4.1 lnc-TMTC3-4:1
5.0 lnc-TMTC3-4:1
5.1 LINC02399:2
5.2 LINC02399:4