Transcript: LINC02353:3

Basic information

LNCipedia transcript ID: LINC02353:3 
HGNC Gene Symbol: LINC02353    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2353
Ensembl Gene ID: ENSG00000251329
Ensembl Transcript ID: ENST00000515181
RefSeq ID: NR_134672
Location (hg38): chr4:32351038-32353220
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 849 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007505; ENST00000515181; ENST00000515181.1; RP11-240A16.1-001; OTTHUMT00000360314.1; NONHSAT095955; NR_134672.1
Alternative gene names: XLOC_003499; linc-DTHD1-7; ENSG00000251329; RP11-240A16.1; ENSG00000251329.1; OTTHUMG00000160346.1; LINC02353; LOC101927363


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.4021 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02353:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH7-7:1
3.1 lnc-PCDH7-7:1
4.0 lnc-PCDH7-7:1
4.1 lnc-PCDH7-7:1
5.0 lnc-PCDH7-7:1
5.1 LINC02353:2
5.2 LINC02353:3