Transcript: LINC02350:21

Basic information

LNCipedia transcript ID: LINC02350:21 
HGNC Gene Symbol: LINC02350    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2350
Ensembl Gene ID: ENSG00000255595
Ensembl Transcript ID: ENST00000544419
Location (hg38): chr12:126425990-126434008
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544419; ENST00000544419.1; RP5-944M2.2-001; OTTHUMT00000399844.1; NONHSAT031774
Alternative gene names: ENSG00000256927; RP5-944M2.2; ENSG00000256927.1; OTTHUMG00000168468.1; LINC02350; ENSG00000255595.3; AC007368.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.4268 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02350:21 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-8:1
3.1 lnc-TMEM132B-8:1
4.0 lnc-TMEM132B-8:1
4.1 lnc-TMEM132B-8:1
5.0 lnc-TMEM132B-8:1
5.1 LINC02350:13
5.2 LINC02350:21