Transcript: LINC02347:20

Basic information

LNCipedia transcript ID: LINC02347:20 
HGNC Gene Symbol: LINC02347    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2347
Ensembl Gene ID: ENSG00000214043
Ensembl Transcript ID: ENST00000539969
Location (hg38): chr12:126442526-126469806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1802 bp
Exons: 11
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539969; ENST00000539969.1; RP5-944M2.3-005; OTTHUMT00000399848.1; ENST00000539969.5
Alternative gene names: ENSG00000214043; RP5-944M2.3; ENSG00000214043.3; OTTHUMG00000168469.1; ENSG00000214043.7; LINC02347


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.5512 non-coding 
CPAT coding probability 13.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02347:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132B-9:4
3.1 lnc-TMEM132B-9:3
4.0 lnc-TMEM132B-9:3
4.1 lnc-TMEM132B-9:3
5.0 lnc-TMEM132B-9:3
5.1 LINC02347:9
5.2 LINC02347:20