Transcript: LINC02339:5

Basic information

LNCipedia transcript ID: LINC02339:5 
HGNC Gene Symbol: LINC02339    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2339
Ensembl Gene ID: ENSG00000279797
Ensembl Transcript ID: ENST00000472649
RefSeq ID: NR_134946
Location (hg38): chr13:61424689-61427946
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 752 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000472649.2; NR_134946.1
Alternative gene names: ENSG00000279797.1; RP11-432J3.4; LINC02339; LOC101926951


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -168.8153 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02339:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PCDH20-11:2
4.1 lnc-PCDH20-11:2
5.0 lnc-PCDH20-11:2
5.1 LINC02339:3
5.2 LINC02339:5