Transcript: LINC02280:16

Basic information

LNCipedia transcript ID: LINC02280:16 
LNCipedia gene ID: LINC02280
Ensembl Gene ID: ENSG00000258736
Ensembl Transcript ID: ENST00000554954
Location (hg38): chr14:104653599-104655787
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 486 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554954; ENST00000554954.1; RP11-982M15.7-001; OTTHUMT00000410525.1; NONHSAT040267
Alternative gene names: ENSG00000258736; RP11-982M15.7; ENSG00000258736.1; OTTHUMG00000170815.1; AL583722.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.3874 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02280:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM179-1:1
3.1 lnc-TMEM179-2:1
4.0 lnc-TMEM179-2:1
4.1 lnc-TMEM179-2:1
5.0 lnc-TMEM179-2:1
5.1 LINC02280:7
5.2 LINC02280:16