Transcript: LINC02261:3

Basic information

LNCipedia transcript ID: LINC02261:3 
HGNC Gene Symbol: LINC02261    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2261
Ensembl Gene ID: ENSG00000249699
Ensembl Transcript ID: ENST00000512873
RefSeq ID: NR_125921
Location (hg38): chr4:27217479-27282225
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2802 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00007495; ENST00000512873; ENST00000512873.1; RP11-415C15.2-001; OTTHUMT00000365728.1; NONHSAT095898; NR_125921; NR_125921.1
Alternative gene names: XLOC_003484; linc-PCDH7-9; ENSG00000249699; RP11-415C15.2; ENSG00000249699.1; OTTHUMG00000161689.1; LINC02261; LOC101929199


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.2824 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02261:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STIM2-1:1
3.1 lnc-STIM2-1:1
4.0 lnc-STIM2-1:1
4.1 lnc-STIM2-1:1
5.0 lnc-STIM2-1:1
5.1 LINC02261:2
5.2 LINC02261:3