Transcript: LINC02237:20

Basic information

LNCipedia transcript ID: LINC02237:20 
HGNC Gene Symbol: LINC02237    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2237
Ensembl Gene ID: ENSG00000253434
Ensembl Transcript ID: ENST00000522390
Location (hg38): chr8:111742012-111756632
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 456 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522390; ENST00000522390.1; RP11-58O3.2-001; OTTHUMT00000380774.1; NONHSAT128335
Alternative gene names: ENSG00000254262; RP11-58O3.2; ENSG00000254262.1; OTTHUMG00000164885.1; AC022360.2; ENSG00000253434.6; LINC02237


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.344 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02237:20 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-67H2.1.1-2:3
3.1 lnc-RP11-67H2.1.1-2:3
4.0 lnc-RP11-67H2.1.1-2:3
4.1 lnc-RP11-67H2.1.1-2:3
5.0 lnc-RP11-67H2.1.1-2:3
5.1 LINC02237:10
5.2 LINC02237:20