Transcript: LINC02237:16

Basic information

LNCipedia transcript ID: LINC02237:16 
LNCipedia gene ID: LINC02237
Location (hg38): chr8:111416515-111542973
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 470 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000524236.1; RP11-1101K5.1-002; OTTHUMT00000380772.1; NONHSAT128328; FPKM1_group_31994_transcript_1
Alternative gene names: ENSG00000253434.1; RP11-1101K5.1; OTTHUMG00000164883.1; ENSG00000253434.5; LINC02237


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8087 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02237:16 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-422N16.3.1-4:3
4.0 lnc-RP11-422N16.3.1-4:3
4.1 lnc-RP11-422N16.3.1-4:3
5.0 lnc-RP11-422N16.3.1-4:3
5.1 LINC02237:5
5.2 LINC02237:16