Transcript: LINC02237:13

Basic information

LNCipedia transcript ID: LINC02237:13 
HGNC Gene Symbol: LINC02237    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2237
Ensembl Gene ID: ENSG00000253434
Ensembl Transcript ID: ENST00000521904
Location (hg38): chr8:111376639-111470617
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521904.1; RP11-1101K5.1-001; OTTHUMT00000380770.1; NONHSAT128325; ENST00000521904.5
Alternative gene names: ENSG00000253434.1; RP11-1101K5.1; OTTHUMG00000164883.1; ENSG00000253434.5; LINC02237; ENSG00000253434.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.4321 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02237:13 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-422N16.3.1-4:1
4.0 lnc-RP11-422N16.3.1-4:1
4.1 lnc-RP11-422N16.3.1-4:1
5.0 lnc-RP11-422N16.3.1-4:1
5.1 LINC02237:2
5.2 LINC02237:13