Transcript: LINC02235:5

Basic information

LNCipedia transcript ID: LINC02235:5 
LNCipedia gene ID: LINC02235
Location (hg38): chr8:81885377-81923249
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 524 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT127480
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.4214 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02235:5 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHMP4C-4:2
4.0 lnc-CHMP4C-4:2
4.1 lnc-CHMP4C-4:2
5.0 lnc-CHMP4C-4:2
5.1 LINC02235:3
5.2 LINC02235:5