Transcript: LINC02226:18

Basic information

LNCipedia transcript ID: LINC02226:18 
LNCipedia gene ID: LINC02226
Ensembl Gene ID: ENSG00000249159
Ensembl Transcript ID: ENST00000512406
Location (hg38): chr5:8387638-8457564
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512406; ENST00000512406.1; RP11-480D4.2-001; OTTHUMT00000365851.1; NONHSAT100285; ENST00000512406.5
Alternative gene names: ENSG00000249159; RP11-480D4.2; ENSG00000249159.1; OTTHUMG00000161712.1; ENSG00000249159.2; ENSG00000249159.6; AC091965.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.6398 non-coding 
CPAT coding probability 48.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC02226:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FASTKD3-1:1
3.1 lnc-FASTKD3-1:1
4.0 lnc-FASTKD3-1:1
4.1 lnc-FASTKD3-1:1
5.0 lnc-FASTKD3-1:1
5.1 LINC02226:7
5.2 LINC02226:18