Transcript: LINC02223:13

Basic information

LNCipedia transcript ID: LINC02223:13 
HGNC Gene Symbol: LINC02223    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2223
Ensembl Gene ID: ENSG00000249937
Ensembl Transcript ID: ENST00000510648
Location (hg38): chr5:17919228-17955837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 459 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510648; ENST00000510648.1; RP11-454P21.1-004; OTTHUMT00000366242.1; NONHSAT100667
Alternative gene names: ENSG00000249937; RP11-454P21.1; ENSG00000249937.1; OTTHUMG00000161859.1; ENSG00000249937.5; LINC02223


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.389 non-coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02223:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-6:3
3.1 lnc-BASP1-7:3
4.0 lnc-BASP1-7:3
4.1 lnc-BASP1-7:3
5.0 lnc-BASP1-7:3
5.1 LINC02223:8
5.2 LINC02223:13