Transcript: LINC02219:11

Basic information

LNCipedia transcript ID: LINC02219:11 
HGNC Gene Symbol: LINC02219    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2219
Ensembl Gene ID: ENSG00000253787
Ensembl Transcript ID: ENST00000520762
RefSeq ID: NR_105003
Location (hg38): chr5:68189876-68198407
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 454 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105003; ENST00000520762.1; NR_105003.1
Alternative gene names: ENSG00000253787.1; RP11-404L6.2; LINC02219; LOC102467655


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.8298 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02219:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIK3R1-1:6
4.0 lnc-RP11-404L6.2.1-1:13
4.1 lnc-RP11-404L6.2.1-1:13
5.0 lnc-RP11-404L6.2.1-1:13
5.1 LINC02219:5
5.2 LINC02219:11