Transcript: LINC02217:39

Basic information

LNCipedia transcript ID: LINC02217:39 
HGNC Gene Symbol: LINC02217    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2217
Ensembl Gene ID: ENSG00000248455
Ensembl Transcript ID: ENST00000507730
Location (hg38): chr5:17404146-17441678
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 416 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009359; ENST00000507730; ENST00000507730.1; RP11-321E2.3-002; OTTHUMT00000366263.1; NONHSAT100637; ENST00000507730.5
Alternative gene names: XLOC_004308; linc-PRDM9-8; ENSG00000248455; RP11-321E2.3; ENSG00000248455.1; OTTHUMG00000161871.1; ENSG00000248455.5; LINC02217


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.4313 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02217:39 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BASP1-2:7
3.1 lnc-BASP1-3:7
4.0 lnc-BASP1-3:7
4.1 lnc-BASP1-3:7
5.0 lnc-BASP1-3:7
5.1 LINC02217:16
5.2 LINC02217:39