Transcript: LINC02216:3

Basic information

LNCipedia transcript ID: LINC02216:3 
HGNC Gene Symbol: LINC02216    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2216
Ensembl Gene ID: ENSG00000249551
Ensembl Transcript ID: ENST00000513366
Location (hg38): chr5:118575575-118581324
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009495; ENST00000513366; ENST00000513366.1; RP11-2N5.2-001; OTTHUMT00000371165.1; NONHSAT103405
Alternative gene names: XLOC_004526; linc-DMXL1-2; ENSG00000249551; RP11-2N5.2; ENSG00000249551.1; OTTHUMG00000162954.1; LINC02216


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -354.1058 non-coding 
CPAT coding probability 7.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02216:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DMXL1-2:1
3.1 lnc-DMXL1-2:1
4.0 lnc-DMXL1-2:1
4.1 lnc-DMXL1-2:1
5.0 lnc-DMXL1-2:1
5.1 LINC02216:2
5.2 LINC02216:3