Transcript: LINC02200:8

Basic information

LNCipedia transcript ID: LINC02200:8 
HGNC Gene Symbol: LINC02200    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2200
Ensembl Gene ID: ENSG00000250358
Ensembl Transcript ID: ENST00000507565
Location (hg38): chr5:112628600-112630702
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009483; ENST00000507565; ENST00000507565.1; RP11-159K7.2-003; OTTHUMT00000370968.1; NONHSAT103233
Alternative gene names: XLOC_004509; linc-APC-1; ENSG00000250358; RP11-159K7.2; ENSG00000250358.1; OTTHUMG00000162901.1; ENSG00000250358.5; LINC02200


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -254.6804 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02200:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APC-1:2
3.1 lnc-APC-1:2
4.0 lnc-APC-1:2
4.1 lnc-APC-1:2
5.0 lnc-APC-1:2
5.1 LINC02200:4
5.2 LINC02200:8